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Publications - Sexyparth

A. Bendahmane team

 

38-Kim S, Piquerez SJM, Ramirez-Prado JS, Mastorakis E, Veluchamy A, Latrasse D, Manza-Mianza D, Brik-Chaouche R, Huang Y, Rodriguez-Granados NY, Concia L, Blein T, Citerne S, Bendahmane A, Bergounioux C, Crespi M, Mahfouz MM, Raynaud C, Hirt H, Ntoukakis V, Benhamed M. (2020) GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5' and 3' ends of its target genes. Nucleic Acids Res. 19;48:5953-5966.

Télécharger le fichier «HAL-38-GCN. hal-02889481.pdf» (6 MB)

 

37-Concia L, Veluchamy A, Ramirez-Prado JS, Martin-Ramirez A, Huang Y, Perez M, Domenichini S, Rodriguez Granados NY, Kim S, Blein T, Duncan S, Pichot C, Manza-Mianza D, Juery C, Paux E, Moore G, Hirt H, Bergounioux C, Crespi M, Mahfouz MM, Bendahmane A, Liu C, Hall A, Raynaud C, Latrasse D, Benhamed M. (2020) Wheat chromatin architecture is organized in genome territories and transcription factories. Genome Biol. 29;21(1):104.

Télécharger le fichier «HAL-37-HiC-Wheathal-02571325.pdf» (8.6 MB)

 

36-Gomez Roldana MC, Périlleux C, Morina H, Huerga-Fernandez S, Latrasse D, Benhamed M, Bendahmane, A. (2017). Natural and induced loss of function mutations in SlMBP21 MADS-box gene led to jointless-2 phenotype in tomato. Scientific Reports, 7. DOI : 10.1038/s41598-017-04556-1

Télécharger le fichier «HAL-36-j2.hal-01606968.pdf» (3.9 MB)

 

35-Ligerot, A. de Saint Germain, T. Waldie, C. Troadec, S. Citerne, N. Kadakia, J-P. Pillot, M.  Prigge, G. Aubert, A. Bendahmane, O. Leyser, M. Estelle, F. Debellé, C. Rameau (2017) The Pea Branching RMS2 Gene Encodes the PsAFB4/5 Auxin Receptor and is 3 Involved in an Auxin-Strigolactone Regulation Loop. Plos Genetics. Dec 8;13(12):e1007089.

Télécharger le fichier «HAL-35-RMS2 hal-02627660.pdf» (6.2 MB)

 

34-Kirienko AN, Porozov YB, Malkov NV, Akhtemova GA, Le Signor C, Thompson R, Saffray C, Dalmais M, Bendahmane A, Tikhonovich IA, Dolgikh EA (2018) Role of a receptor-like kinase K1 in pea Rhizobium symbiosis development Planta 248:1101–1120

Télécharger le fichier «34-kirienko2018.pdf» (3.1 MB)

 

33-François L, Verdenaud M, Fu X, Ruleman D, Dubois A, Vandenbussche M, Bendahmane A, Raymond O, Just J, Bendahmane M. (2018) A miR172 target-deficient AP2-like gene correlates with the double flower phenotype in roses. Sci Rep. 27;8(1):12912.

Télécharger le fichier «33-miR172hal-02389731.pdf» (2.5 MB)

 

32-Platon L, Zehraoui F, Bendahmane A.,  Fariza Tahi (2018) IRSOM, a reliable identifier of ncRNAs based on supervised self-organizing maps with rejection. Bioinformatics, Vol: 34, Pages i620–i628

Télécharger le fichier «32-IRSOMhal-02736940.pdf» (761.9 KB)

 

31-Fonouni-Farde C, Miassod A, Laffont C, Morin H, Bendahmane A, Diet A, Frugier F. (2019) Gibberellins negatively regulate the development of Medicago truncatula root system. Sci Rep. Feb 20;9(1):2335.

Télécharger le fichier «31-GA_Florian.hal-02404347.pdf» (3.6 MB)

 

30-Fruchard C, Badouin H, Latrasse D, Devani RS, Muyle A, Rhoné B, Susanne R, Banerjee AK, Bendahmane A, Marais G (2020) Evidence for dosage compensation in Coccinia grandis, a plant with a highly 2 heteromorphic XY system. Submitted

 

29-Fantini E, Sulli M, Zhang L, Aprea G, Jiménez-Gómez JM, Bendahmane A, Perrotta G, Giuliano G, Facella P (2019) Pivotal Roles of Cryptochromes 1a and 2 in Tomato Development and Physiology. Plant Physiol.179(2):732-748.

Télécharger le fichier «29-Elio.full.hal-02619815.pdf» (2.6 MB)

 

28- Girardin A, Wang T, Ding Y, Keller J, Buendia L, Gaston M, Ribeyre C, Gasciolli V, Auriac MC, Vernié T, Bendahmane A, Ried MK, Parniske M, Morel P, Vandenbussche M, Schorderet M, Reinhardt D, Delaux PM, Bono JJ, Lefebvre B. (2020) LCO Receptors Involved in Arbuscular Mycorrhiza Are Functional for Rhizobia Perception in Legumes. Curr Biol. 2019 Dec 16;29(24):4249-4259.e5.

Télécharger le fichier «28-LCO_CurrentBiologyhal-02628042.pdf» (3.3 MB)

 

27- Devani RS, Chirmade T, Sinha S, Bendahmane A, Dholakia BB, Banerjee AK, Banerjee J (2019) Flower bud proteome reveals modulation of sex-biased proteins potentially associated with sex expression and modification in dioecious Coccinia grandis. BMC Plant Biol. 2019 Jul 23;19(1):330.

Télécharger le fichier «27-Ravi.hal-02617710.2019.pdf» (2.4 MB)

 

26- Kreplak J, Madoui MA, Cápal P, Novák P, Labadie K, Aubert G, Bayer PE, Gali KK, Syme RA, Main D, Klein A, Bérard A, Vrbová I, Fournier C, d'Agata L, Belser C, Berrabah W, Toegelová H, Milec Z, Vrána J, Lee H, Kougbeadjo A, Térézol M, Huneau C, Turo CJ, Mohellibi N, Neumann P, Falque M, Gallardo K, McGee R, Tar'an B, Bendahmane A, Aury JM, Batley J, Le Paslier MC, Ellis N, Warkentin TD, Coyne CJ, Salse J, Edwards D, Lichtenzveig J, Macas J, Dole┼żel J, Wincker P, Burstin J. (2019) A reference genome for pea provides insight into legume genome evolution. Nat Genet. Sep;51(9):1411-1422.

Télécharger le fichier «26-PeaGenome hal-02278272.pdf» (23.5 MB)

 

25- Eleblu JSY, Haraghi A, Mania B, Camps C, Rashid D, Morin H, Dogimont C, Boualem A, Bendahmane A. (2019) The gynoecious CmWIP1 transcription factor interacts with CmbZIP48 to inhibit carpel development. Sci Rep. 28;9(1):15443.

Télécharger le fichier «25-lBZIP_melon.hal-02889482.pdf» (1.6 MB)

 

24-Roldan MVG, Izhaq F, Verdenaud M, Eleblu J, Haraghi A, Sommard V, Chambrier P, Latrasse D, Jégu T, Benhamed M, Szécsi J, Bendahmane M, Boualem A, Bendahmane A (2020) Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development. Nature Commun Biol 15;3(1):239.

Télécharger le fichier «24-Roldan_et_al-2020-Communications_Biology.pdf» (1.3 MB)

 

23- Zhao G, Lian Q, Zhang Z, Fu Q, He Y, Ma S, Ruggieri V, Monforte AJ, Wang P, Julca I, Wang H, Liu J, Xu Y, Wang R, Ji J, Xu Z, Kong W, Zhong Y, Shang J, Pereira L, Argyris J, Zhang J, Mayobre C, Pujol M, Oren E, Ou D, Wang J, Sun D, Zhao S, Zhu Y, Li N, Katzir N, Gur A, Dogimont C, Schaefer H, Fan W, Bendahmane A, Fei Z, Pitrat M, Gabaldón T, Lin T, Garcia-Mas J, Xu Y, Huang S. (2019) A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits. Nat Genet. 2019 Nov;51(11):1607-1615.

Télécharger le fichier «23-Melon_germplasmshal-02527982.pdf» (6.4 MB)

 

22- Arun A, Coelho SM, Peters AF, Bourdareau S, Pérès L, Scornet D, Strittmatter M, Lipinska AP, Yao H, Godfroy O, Montecinos GJ, Avia K, Macaisne N, Troadec C, Bendahmane A, Cock JM (2019) Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae. Elife. 15;8. pii: e43101.

Télécharger le fichier «22-.elife-43101-v3.hal-02042404.pdf» (2.1 MB)

 

21-Ruggieri V, Alexiou KG, Morata J, Argyris J, Pujol M, Yano R, Nonaka S, Ezura H, Latrasse D,  Boualem A, Benhamed M, Bendahmane A, Cigliano RA, Sanseverino W, Puigdomènech P, Casacuberta JM, Garcia-Mas J (2018) An improved assembly and annotation of the melon (Cucumis melo L.) reference genome. Scietific Reports 8 (1), 8088

Télécharger le fichier «21-Melon_genomehal-02624474_pdf.pdf» (1.8 MB)

 

20-Giner, A., Pascual, L., Bourgeois, M., Gyetvai, G., Rios, P., Picó, B., Troadec, C., Bendahmane, A., Garcia-Mas, J., Martín-Hernández, AM (2017). A mutation in the melon Vacuolar Protein Sorting 41prevents systemic infection of Cucumber mosaic virus. Scientific reports, 7 (1), 10471. DOI : 10.1038/s41598-017-10783-3

Télécharger le fichier «20-VPS41-Scientific-reportercs.hal-01604472.pdf» (1.6 MB)

 

19-Raymond O, Gouzy J, Just, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, Caissard JC, Couloux A, Cottret L, Aury JM, Szecsi J, Latrasse D, Madoui MA, François L, Fu XP, Yang SH, Dubois A, Piola A, Larrieu A, Perez M, Labadie K, Perrier L, Govetto B, Labrousse Y, Villand P, Bardoux C, Boltz V, Lopez- Roques C, Heitzler P, Vernoux T, Vandenbussche M, Quesneville H, Boualem A, Bendahmane A, Liu C, Le Bris M, Salse J, Baudino S, Benhamed M, Wincker P, Bendahmane M. (2018) The Rosa genome provides new insights into the domestication of modern roses. Nature Genetics, 50 (6), 772-777.

Télécharger le fichier «19-Rose_Nature-Genetics-ercshal-01798003..pdf» (5.4 MB)

 

18-Jacob P, Avni A, and Bendahmane A. (2018) Translational Research: Exploring and Creating Genetic Diversity Trends in Plant Sciences 23(1):42-52.

Télécharger le fichier «18-Review-translational-research-Trends-plant-Sciences-ercs. hal-02623782.pdf» (1.8 MB)

 

17-Ramirez-Prado JS, Piquerez SJM, Bendahmane A, Hirt H, Raynaud C, Benhamed M. (2018) Modify the Histone to Win the Battle: Chromatin Dynamics in Plant-Pathogen Interactions. Front Plant Sci. 19;9:355.

Télécharger le fichier «17-Review-epigenetics-Frantier-ercs.hal-02628892.pdf» (1.3 MB)

 

16-Pecrix Y, Staton SE, Sallet E, Lelandais-Brière C, Moreau S, Carrère S, Blein T, Jardinaud MF, Latrasse D, Zouine M, Zahm M, Kreplak J, Mayjonade B, Satgé C, Perez M, Cauet S, Marande W, Chantry-Darmon C, Lopez-Roques C, Bouchez O, Bérard A, Debellé F, Muños S, Bendahmane A, Bergès H, Niebel A, Buitink J, Frugier F, Benhamed M, Crespi M, Gouzy J, Gamas P. (2018) Whole-genome landscape of Medicago truncatula symbiotic genes.Nat Plants. Nov 5. doi: 10.1038/s41477-018-0286-7.

Télécharger le fichier «16-Medicago-Nature Plant-ERCS.pdf» (1.7 MB)

 

15-Devani RS, Sinha S, Banerjee J, Sinha RK, Bendahmane A, Banerjee AK. (2017) De novo transcriptome assembly from flower buds of dioecious, gynomonoecious and chemically masculinized female Coccinia grandis reveals genes associated with sex expression and modification. BMC Plant Biol. 2017 Dec 12;17(1):241.

Télécharger le fichier «15-Coccinia_RNAseqhal-02627183.pdf» (3.3 MB)

 

14- Pozniak CJ, Stein N….Bendahmane A et al., (2018). Shifting the limits in wheat research and breeding using a fully annotated reference genome. Science. 2018 17;361(6403).

Télécharger le fichier «14-Blé-Science1hal-01885399.pdf» (4.1 MB)

13-Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A; International Wheat Genome Sequencing Consortium, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C. (2018). The transcriptional landscape of polyploid wheat Science. 17;361(6403)

Télécharger le fichier «13-Blé-Science2-ERChal-02629204.pdf» (1.7 MB)

12-McAdam, EL., Meitzel, T., Quittenden, LJ., Davidson, SE., Dalmais, M., Bendahmane, A, Thompson, R., Smith, JJ., Nichols, DS., Urquhart, S., Gélinas-Marion, A., Aubert, G., Ross, JJ (2017). Evidence that auxin is required for normal seed size and starch synthesis in pea. The New phytologist, 216 (1), 193-204. DOI : 10.1111/nph.14690

Télécharger le fichier «12-Auxin-Pea-New_Phytologist-ERCS.HAL Id hal-02625201.pdf» (1.2 MB)

 

11-David Latrasse; Natalia Rodriguez-Granados; Alaguraj Veluchamy; Kiruthiga Gayathri Mariappan; Claudia Bevilacqua; Nicolas Crapart; Céline Camps; Vivien Sommard; Cecile Raynaud; Catherine Dogimont; Adnane Boualem; Moussa Benhamed; Abdelhafid Bendahmane (2017). The Quest for Epigenetic regulation underlying unisexual flower development in Cucumis melo. Epigenetics and Chromatin, 10 (22), 1-17.

Télécharger le fichier «11-Latrasse_2017-ERCS01594682.pdf» (1.4 MB)

 

10-Ríos, Argyris, Vegas, Leida, Kenigswald, Tzuri, Troadec, Bendahmane, Katzir, Picó, Monforte, Garcia-Mas (2017). ETHQV6.3 is involved in melon climacteric fruit ripening and is encoded by a NAC domain transcription factor. Plant Journal. DOI : 10.1111/tpj.13596

Télécharger le fichier «10-Fruit-nor-melon_The_Plant_Journal-ERCS.hal-0262690.pdf» (836.7 KB)

 

9-Jacob, P., Hirt, H., Bendahmane, A (2017). The heat-shock protein/chaperone network and multiple stress resistance. Plant biotechnology journal, 15 (4), 405-414. DOI : 10.1111/pbi.12659

Télécharger le fichier «9-Jacob-review-PBJ-ERCShal-01602732hal-01602732.pdf» (292.4 KB)

 

8-Julia Zinsmeister, Emmanuel Terrasson, Emilie Chatelain, David Lalanne, Benoit Ly Vu, Cécile Dubois-Laurent, Emmanuel Geoffriau, Christine le Signor, Marion Dalmais, Katharina vom Dorp, Peter Dörmann, Karine Gallardo, Abdelhafid  Bendahmane, Julia Buitink, Olivier Leprince. (2016) ABI5 plays a major role in regulating seed maturation and longevity in legumes. Plant Cell 28(11):2735-2754

Télécharger le fichier «8-Leprince_plant_cell_20l.pdf» (1.6 MB)

 

7- Boualem A, Lemhemdi A, Sari MA, Pignoly S, Troadec C, Abou Choucha F, Solmaz I, Sari N, Dogimont C, Bendahmane A. (2016) The Andromonoecious Sex Determination Gene Predates the Separation of Cucumis and Citrullus Genera. PLoS One. 2016 May 12;11(5):e0155444.

Télécharger le fichier «7-Dogimont PlosOne 2016 e0155444_1.pdf» (3.1 MB)

 

6-Boualem A, Dogimont C, Bendahmane A. (2016) The battle for survival between viruses and their host plants. Curr Opin Virol. Jan 19;17:32-38.

Télécharger le fichier «6-Public-Revue.Virus.pdf» (641.9 KB)

 

5-Boualem, A; Troadec, C; Camps, C; Lemhemdi, A; Morin, H; Sari, M. A.; Fraenkel-Zagouri, R; Kovalski, I; Dogimont, C; Perl-Treves, R; Bendahmane, A. (2015) A cucurbit androecy gene reveals how unisexual flowers develop and dioecy emerges. Science, 350; 6261: 688-691  

Télécharger le fichier «5-Boualem.Science-2015-688-91.pdf» (1.2 MB)

 

4-Boualem A, Fleurier S, Troadec C, Audigier P, Kumar AP, Chatterjee M, Alsadon AA, Sadder MT, Wahb-Allah MA, Al-Doss AA, Bendahmane A.(2014)  Development of a Cucumis sativus TILLinG platform for forward and reverse genetics. PLoS One. 2014 May 16;9(5):e97963.

Télécharger le fichier «4-boualem_2014_1.pdf» (723.8 KB)

 

3-Zhanga J., Boualem, A., Bendahmane A*, Minga R.* (2014) Genomics of Sex Determination. Current Opinion in Plant Biology, 18:110-6.

Télécharger le fichier «3-COPB..pdf» (751.7 KB)

 

2-Vicente-Dólera N, Troadec C, Moya M, del Río-Celestino M, Pomares-Viciana T, Bendahmane A, Picó B, Román B, Gómez P.(2014) First TILLING platform in Cucurbita pepo: A new mutant resource for gene function and crop improvement. PLoS One. 2014 Nov 11;9(11):e112743

Télécharger le fichier «2-2014_Vincente-Dolera_PlosOne_1.pdf» (991.7 KB)

 

1-Martínez C, Manzano S, Megías Z, Barrera A, Boualem A, Garrido D, Bendahmane A, Jamilena M. (2014) Molecular and functional characterization of CpACS27A gene reveals its involvement in monoecy instability and other associated traits in squash (Cucurbita pepo L.). Planta.  Jun;239(6):1201-15.

Télécharger le fichier «1-planta-pepo.pdf» (1.3 MB)