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Publications POPS

La Plateforme TranscriptOmique de l'IPS2


Depuis 2003 la plateforme POPS est co-auteur de près de 180 publications, ce qui représente en moyenne 10 publications par an.



Affiliations de la plateforme

  • Université Paris-Saclay, CNRS, INRAE, Univ Evry,  Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
  • Université de Paris, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France


  • Clément Cuello, AurélieBaldy, Véronique Brunaud, Johann Joets, Marie-Pierre Jacquemot, Lucy Botran, Yves Griveau, Cécile Guichard, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Philippe Leroy, Valérie Méchin, Matthieu Reymond, and Sylvie Coursol (2019) Systems biology reveals a gene coexpression network associated with cell wall degradability in maize". PLOS ONE.
  • Polina Volkova, Gustavo T. Duarte, Ludivine Soubigou-Taconnat, Elizaveta A. Kazakova, Stéphanie Pateyron, Vladimir S. Bondarenko, Sofia V. Bitarishvili, Ekaterina S. Makarenko, Roman S. Churyukin, Maria A. Lychenkova, Irina V. Gorbatova, Christian Meyer, Stanislav A. Geras’kin (2019) Early response of barley embryos to low-dose gamma-irradiation of seeds triggers changes in the transcriptional profile and an increase of hydrogen peroxide content in seedlings. Journal of Agronomy and Crop Science.
  • Wei Zhang, Françoise Cochet, Maharajah Ponnaiah, Sandrine Lebreton, Lucrèce Matheron, Cédric Pionneau, Marie Boudsocq, Francesca Resentini, Stéphanie Huguet, Miguel Ángel Blázquez, Christophe Bailly, Juliette Puyaubert and Emmanuel Baudouin (2019) The MPK8-TCP14 pathway promotes seed germination in Arabidopsis. Plant Journal.
  • Céline FORZANI, Gustavo TURQUETO-DUARTE, Gilles CLEMENT, Stéphanie HUGUET, Christine PAYSANT-LE-ROUX, Raphaël MERCIER, Anne-Sophie LEPRINCE, Christian MEYER (2019) Mutations of the AtYAK1 kinase suppress TOR deficiency in Arabidopsis. Cell Reports
  • Frédéric Chauffour, Marlène Bailly, François Perreau, Gwendal Cueff, Hiromi Suzuki, Boris Collet, Anne Frey, Gilles Clément, Ludivine Soubigou-Taconnat, Thierry Balliau, Anja Krieger-Liszkay, Loïc Rajjou, and Annie Marion-Poll (2019) Multi-omics analysis reveals sequential roles for ABA during Arabidopsis seed maturation. Plant Physiology.
  • Stefania Del Prete, Anne Molitor, Delphine Charif, Nadia Bessoltane, Ludivine Soubigou- Taconnat, Cécile Guichard, Véronique Brunaud, Fabienne Granier, Paul Fransz, Valérie Gaudin (2019) Extensive nuclear reprogramming and 1 endoreduplication in mature leaf during floral induction. BMC Plant Biology.
  • Gwyneth Ingram, Audrey Creff, Lysiane Brocard, Céline Vicedo, Vincent Duplan, Jérôme Joubès, Ludivine Taconnat, Nicolas Doll (2019) A stress-response-related inter-compartmental signalling pathway regulates embryonic cuticle integrity in Arabidopsis. PLOS Genetics.
  • Mélodie Sawicki, Marine Rondeau, Barbara Courteaux, Fanja Rabenoelina, Eric Gomès, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Christophe Clément, Essaid Ait Barka, Nathalie Vaillant-Gaveau, Cédric Jacquard (2019). On a cold night: transcriptomics of grapevine flower unveals signal transduction and impacted metabolism. IJMS.
  • Haddad C, Trouverie J, Arkoun M, Yvin JC, Caïus J, Brunaud V, Laîné P, Etienne P. (2019) Silicon supply affects the root transcriptome of Brassica napus L. Planta.
  • Lallemand F, Martin-Magniette ML, Gilard F, Gakière B, Launay-Avon A, Delannoy É, Selosse MA. (219) In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi. Plant Journal.


  • Xia Q, Saux M, Ponnaiah M, Gilard F, Perreau F, Huguet S, Balzergue S, Langlade N, Bailly C, Meimoun P, Corbineau F, El-Maarouf-Bouteau H. (2018) One Way to Achieve Germination: Common Molecular Mechanism Induced by Ethylene and After-Ripening in Sunflower Seeds International Journal of Molecular Sciences, 20;19(8).
  • Alberto D, Couée I, Pateyron S, Sulmon C, Gouesbet G. (2018) Low doses of triazine xenobiotics mobilize ABA and cytokinin regulations in a stress- and low-energy-dependent manner. Plant Science,274:8-22.
  • Farjad M, Rigault M, Pateyron S, Martin-Magniette ML, Krapp A, Meyer C, Fagard M. (2018) Nitrogen Limitation Alters the Response of Specific Genes to Biotic Stress. Int J Mol Sci, 19(11).
  • Rogier O, Chateigner A, Amanzougarene S, Lesage-Descauses MC, Balzergue S, Brunaud V, Caius J, Soubigou-Taconnat L, Jorge V, Segura V. (2018) Accuracy of RNAseq based SNP discovery and genotyping in Populusnigra. BMC Genomics, 19(1):909.
  • Armezzani A, Abad U, Ali O, Andres Robin A, Vachez L, Larrieu A, Mellerowicz EJ, Taconnat L, Battu V, Stanislas T, Liu M, Vernoux T, Traas J, Sassi M. (2018) Transcriptional induction of cell wall remodelling genes is coupled to microtubule-driven growth isotropy at the shoot apex in Arabidopsis.Development, 145(11).
  • Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B. (2018) Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo. Plant Methods, 3;14:10.
  • Abdelkefi H, Sugliani M, Ke H, Taconnat L, Citerne S, Mouille G, Fakhfakh H, Robaglia C, Field B. (2018) Guanosine tetraphosphate modulates salicylic acid signalling and the resistance of Arabidopsis thaliana to turnip mosaic virus. Molecular Plant Pathology, 19(3):634-646.
  • Rey E, Abrouk M, Keeble-Gagnère G, Karafiátová M, Vrána J, Balzergue S, Soubigou-Taconnat L, Brunaud V, Martin-Magniette ML, Endo TR, Bartoš J. (2018) Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat. Plant Biotechnology Journal, 6. doi: 10.
  • Lloyd A, Blary A, Charif D, Charpentier C, Tran J, Balzergue S, Delannoy E, Rigaill G, Jenczewski E. (2018) Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop. New Phytologist, 217(1):367-377.
  • Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E. (2018) Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Briefings in bioinformatics, 1;19(1):65-76.

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  • Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C, Bensmihen S. (2017) Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. Journal of experimental botany. J Exp Bot. 2017 Jan 10. pii: erw474. doi: 10.1093/jxb/erw474.
  • Basbouss-Serhal I, Pateyron S, Cochet F, Leymarie J, Bailly C. (2017) 5' to 3' mRNA decay contributes to the regulation of Arabidopsis seed germination by dormancy. Plant Physiology. Plant Physiol. 2017 Jan 26. pii: pp.01933.2016. doi: 10.1104/pp.16.01933.
  • Baptiste Genot, Julien Lang, Souha Berriri, Marie Garmier, Francoise Gilard, Stéphanie Pateyron, Katrien Haustraete, Dominique Van Der Straeten, Heribert Hirt, and Jean Colcombet. (2017) Constitutively Active MPK3 reveals convergence of MPK3 and the MPK4-guarding pathway SUMM1/SUMM2. Plant Physiology.
  • Maria Naranjo Arcos, Felix Maurer, Johannes Meiser, Stéphanie Pateyron, Claudia Fink-Straube, and Petra Bauer (2017) Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein. Scientific Reports.
  • Aline voxeur, Ludivine Soubigou-Taconnat, Frédéric Legée, Kaori Sakai, Mylène Durand-Tardif, Catherine Lapierre, and Richard Sibout (2017) Altered lignification in <i>mur1-1</i> a mutant deficient in GDP-L-fucose synthesis with reduced RG-II cross linking. PLOS ONE.
  • Guillaumot D, Lopez-Obando M, Baudry K, Avon A, Rigaill G, Falcon de Longevialle A, Broche B, Takenaka M, Berthomé R, De Jaeger G, Delannoy E, Lurin C. (2017) Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria. PNAS.
  • Martins S, Montiel-Jorda A, Cayrel A, Huguet S, Roux CP, Ljung K, Vert G. (2017) Brassinosteroid signaling-dependent root responses to prolonged elevated ambient temperature. Nature communications.
  • Gayral M, Elmorjani K, Dalgalarrondo M, Balzergue S, Pateyron S, Morel MH, Brunet S, Linossier L, Delluc C, Bakan B, Marion D. (2017) Responses to Hypoxia and Endoplasmic Reticulum Stress Discriminate the Development of Vitreous and Floury Endosperms of Conventional Maize (Zea mays) Inbred Lines. Frontiers in plant science.
  • Enrico Magnani, José M Jiménez-Gómez, Ludivine Soubigou-Taconnat, Loïc Lepiniec, Elisa Fiume. (2017) Profiling the onset of somatic embryogenesis in Arabidopsis. BMC Genomics.
  • Galland M, He D, Lounifi I, Arc E, Clément G, Balzergue S, Huguet S, Cueff G, Godin B, Collet B, Granier F, Morin H, Tran J, Valot B, Rajjou L. (2017) An Integrated "Multi-Omics" Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Frontiers in plant science 2017 Nov 22;8:1984. doi: 10.3389/fpls.2017.01984. eCollection 2017.
  • Zarattini, M., Launay, A., Farjad, M., Wénès, E., Taconnat, L., Boutet, S., Bernacchia, G., and Fagard, M. (2017) The bile acid deoxycholate elicits defences in Arabidopsis and reduces bacterial infection. Molecular plant pathology.
  • Hela Abdelkefi, Matteo Sugliani, Hang Ke, Ludivine Taconnat, Sylvie Citerne, Gregory Mouille, Hatem Fakhfakh, Christophe Robaglia, Ben Field (2017) Guanosine tetraphosphate modulates salicylic acid signalling and the resistance of Arabidopsis thaliana to turnip mosaic virus. Molecular Plant Pathology.
  • Balzergue C, Dartevelle T, Godon C, Laugier E, Meisrimler C, Teulon JM, Creff A, Bissler M, Brouchoud C, Hagège A, Müller J, Chiarenza S, Javot H, Becuwe-Linka N, David P, Péret B, Delannoy E, Thibaud MC, Armengaud J, Abel S, Pellequer JL, Nussaume L, Desnos T (2017) Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nature Communication.

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  • Leonard Shumbe, Anne Chevalier, Bertrand Legeret, Ludivine Taconnat, Fabien Monnet, and Michel Havaux (2016) Singlet Oxygen-Induced Cell Death in Arabidopsis under High Light Stress is Controlled by OXI1 Kinase. Plant Physiology.
  • Elise Albert; Justine Gricourt; Nadia Bertin; Julien Bonnefoi; Stephanie Pateyron; Jean-Philippe Tamby; Frederique Bitton; Mathilde Causse (2016) Genotype by watering regime interactions in cultivated tomato: lessons from linkage mapping and gene expression. Theoretical and Applied Genetics.
  • Marco ZARATTINI, Alban LAUNAY, Estelle WÉNÈS, Mahsa FARJAD, Ludivine TACONNAT, Stéphanie BOUTET, Giovanni BERNACCHIA and Mathilde FAGARD (2016) The bile acid Deoxycholate Elicits WAK2-dependent defenses in Arabidopsis and reduces bacterial infection. Molecular Plant Pathology.
  • Pedroza-Garcia JA, Domenichini S, Mazubert C, Bourge M, White C, Hudik E, Bounon R, Tariq Z, Delannoy E, Del Olmo I, Piñeiro M, Jarillo Quiroga JA, Bergounioux C, Benhamed M, Raynaud C (2016) Role of the Polymerase ϵ sub-unit DPB2 in DNA replication, cell cycle regulation and DNA damage response in Arabidopsis. Nucleic Acids Research. NAR 2016 May 18. pii: gkw449.
  • Anne-Sophie Dumas; Ludivine Taconnat; Evangelos Barbas; Guillem Rigaill; Olivier Catrice; Delphine Bernard; Abdelilah Benamar; David Macherel; Abdelhak El Amrani; Richard Berthomé (2016) Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure. BMC Genomics.
  • Lang J, Gonzalez-Mula A, Taconnat L, Clement G, Faure D (2016) The plant GABA signaling downregulates horizontal transfer of the Agrobacterium tumefaciens virulence plasmid. New Phytologist.
  • Castro PH, Couto D, Freitas S, Verde N, Macho AP, Huguet S, Botella MA, Ruiz-Albert J, Tavares RM, Bejarano ER, Azevedo H (2016) SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsis thaliana. Plant Mol Biol.
  • Thomas Rey, Philippe Laporte, Maxime Bonhomme, Marie-Françoise Jardinaud, Stéphanie Huguet, Sandrine Balzergue, Bernard Dumas, Andreas Niebel and Christophe Jacquet (2016) MtNF-YA1, A Central Transcriptional Regulator of Symbiotic Nodule Development, Is Also a Determinant of Medicago truncatula Susceptibility toward a Root Pathogen. Frontiers Science.

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  • Zaag, Rim; Tamby, Jean; Guichard, Cécile; Tariq, Zakia; Rigaill, Guillem; Delannoy, Etienne; Renou, Jean; Balzergue, Sandrine; Mary-Huard, Tristan; Aubourg, Sébastien; Martin-Magniette, Marie; Brunaud, Véronique (2015) GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Research. (28 January 2015) 43 (D1): D1010-D101.
  • Martinez de alba, Angel Emilio; Moreno, Ana; Gabriel, Marc; Mallory, Allison; Christ, Aurélie; Bounon, Rémi; Balzergue, Sandrine; Aubourg, Sébastien; Gautheret, Daniel; Crespi, Martin; Vaucheret, H.; Maizel, Alexis (2015) In plants, decapping prevents RDR6-dependent production of deleterious small RNAs from endogenous mRNAs. Nucleic Acids Research. (11 March 2015) 43 (5): 2902-2913.
  • Yacine Badis, Maxime Bonhomme, Claude Lafitte, Stéphanie Huguet, Sandrine Balzergue, Bernard Dumas and Christophe Jacquet (2015) Transcriptome analysis highlights preformed defenses and signaling pathways controlled by the prAe1 QTL, conferring partial resistance to Aphanomyces euteiches in Medicago truncatula. Molecular Plant Pathology.
  • Danquah A, de Zélicourt A, Boudsocq M, Neubauer J, Frei Dit Frey N, Leonhardt N, Pateyron S, Gwinner F, Tamby JP, Ortiz-Masia D, Marcote MJ, Hirt H, Colcombet J. (2015) Identification and characterization of an ABA-activated MAP kinase cascade in Arabidopsis thaliana. The Plant Journal. Plant J. 2015 Apr;82(2):232-44
  • Basbouss-Serhal I, Soubigou-Taconnat L, Bailly C, Leymarie J. (2015) Germination potential of dormant and non-dormant Arabidopsis seeds is driven by distinct recruitment of mRNAs to polysomes. Plant Physiology. 2015 May 27. pii: pp.00510.2015.
  • Magnard JL, Roccia A, Caissard JC, Vergne P, Sun P, Hecquet R, Dubois A, Hibrand-Saint Oyant L, Jullien F, Nicolè F, Raymond O, Huguet S, Baltenweck R, Meyer S, Claudel P, Jeauffre J, Rohmer M, Foucher F, Hugueney P, Bendahmane M, Baudino (2015) PLANT VOLATILES. Biosynthesis of monoterpene scent compounds in roses. Science.

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  • Moreau S, Fromentin J, Vailleau F, Vernié T, Huguet S, Balzergue S, Frugier F, Gamas P, Jardinaud MF (2014) The symbiotic transcription factor MtEFD and cytokinins are positively acting in the Medicago truncatula and Ralstonia solanacearum pathogenic interaction. New Phytologist.
  • Meimoun P, Mordret E, Langlade NB, Balzergue S, Arribat S, Bailly C, El-Maarouf-Bouteau H (2014) Is gene transcription involved in seed dry after-ripening? PLoS One. 2014 Jan 20;9(1):e86442.
  • Quentin Bruggeman, Marie Garmier, Linda de Bont, Ludivine Soubigou-Taconnat, Christelle Mazubert, Moussa Benhamed, Cécile Raynaud, Catherine Bergounioux and Marianne Delarue (2014) The Polyadenylation Factor Subunit CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR30: A Key Factor of Programmed Cell Death and a Regulator of Immunity in Arabidopsis. Plant Physiology.
  • Aznar A, Chen NW, Rigault M, Riache N, Joseph D, Desmaële D, Mouille G, Boutet S, Soubigou-Taconnat L, Renou JP, Thomine S, Expert D, Dellagi A (2014) Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiology.
  • Virginie Bourion, Chantal Martin, Henri de Larambergue, Françoise Jacquin, Grégoire Aubert, Marie-Laure Martin-Magniette, Sandrine Balzergue, Geoffroy Lescure, Sylvie Citerne, Marc Lepetit, Nathalie Munier-Jolain, Christophe Salon, Gérard Duc (2014) Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a Medicago truncatula highly-branched root mutant. Journal of Experimental Botany.
  • Florian Bardou, Federico Ariel, Craig G. Simpson, Philippe Laporte, Sandrine Balzergue, John W.S. Brown and Martin Crespi (2014) Modulation of nuclear alternative splicing regulators by long ncRNA in Arabidopsis. Developmental Cell.
  • Martin L, Decourteix M, Badel E, Huguet S, Moulia B, Julien JL, Leblanc-Fournier N (2014) The zinc finger protein PtaZFP2 negatively controls stem growth and gene expression responsiveness to external mechanical loads in poplar. New Phytologist.
  • El-Maarouf-Bouteau, Hayat; Sajjad, Yasar; Bazin, Jeremie; Langlade, Nicolas B; Cristescu, Simona M.; Balzergue, Sandrine; Baudouin, Emmanuel; Bailly, Christophe (2014) Reactive oxygen species, abscisic acid and ethylene interact to regulate sunflower seed germination. Plant Cell & Environment.
  • Truong, Hoai-Nam; Thalineau, Elise; Bonneau, Laurent; Fournier, Carine; Potin, Sophie; Balzergue, Sandrine; van Tuinen, Diederik; Jeandroz, Sylvain; Morandi, Dominique (2014) The Medicago truncatula hypermycorrhizal B9 mutant displays an altered response to phosphate and is more susceptible to Aphanomyces euteiches. Plant Cell & Environment.
  • Vladimír Šašek, Martin Janda, Elise Delage, Juliette Puyaubert, Anne Guivarc’h, Encarnación López Maseda, Petre I. Dobrev, José Caius, Károly Bóka, Olga Valentová, Lenka Burketová, Alain Zachowski and Eric Ruelland (2014) Constitutive salicylic acid accumulation in pi4kIIIb1b2 Arabidopsis plants stunts rosette but not root growth. New Phytologist.
  • Gwenaëlle Marchand, Vaˆn Anh Huynh-Thu, Nolan C. Kane, Sandrine Arribat, Didier Varès, David Rengel, Sandrine Balzergue, Loren H. Rieseberg, Patrick Vincourt, Pierre Geurts, Matthieu Vignes, and Nicolas B. Langlade (2014) Bridging physiological and evolutionary time-scales in a gene regulatory network. New Phytologist.
  • Jean-Claude Pasquet, Séjir Chaouch, Catherine Macadré, Sandrine Balzergue, Stéphanie Huguet, Marie-Laure Martin-Magniette, Floriant Bellvert, Xavier Deguercy, Vincent Thareau, Dimitri Heintz, Patrick Saindrenan and Marie Dufresne (2014) Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum. BMC Genomics.
  • Nicolas Frei dit Frey, Ana Victoria Garcia, Jean Bigeard, Rim Zaag, Eduardo Bueso, Marie Garmier, Stéphanie Pateyron, Marie-Ludivine de Tauzia-Moreau, Véronique Brunaud, Sandrine Balzergue, Jean Colcombet, Sébastien Aubourg, Marie-Laure Martin-Magniette and Heribert Hirt (2014) Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for 1 MPK3 as negative  regulator of inducible defenses. Genome Biology.
  • Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Bérard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D (2014) The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. PLoS Genetics.
  • Elodie Hudik, Yasushi Yoshioka, Séverine Domenichini, Mickaël Bourge, Ludivine Soubigou-Taconnat, Christelle Mazubert, Dalong Yi, Lieven De Veylder, Catherine Bergounioux, Moussa Benhamed and Cécile Raynauda (2014) Chloroplast dysfunction causes multiple defects in cell cycle progression in the Arabidopsis crumpled leaf mutant. Plant Physiology.
  • Barthole, G  ; To, A  ; Marchive, C ; Brunaud, V ; Soubigou-Taconnat, L  ; Berger, N  ; Dubreucq, B ; Lepiniec, L ; Baud, S (2014)  MYB118 represses endosperm maturation in seeds of Arabidopsis. Plant Physiology.
  • Arnaud, C ; Clement, M  ; Thibaud, MC ; Javot, H  ; Chiarenza, S ; Delannoy, E  ; Revol, J  ; Soreau, P  ; Balzergue, S ; Block, MA  ; Marechal, E  ; Desnos, T  ; Nussaume, L (2014) Identification of phosphatin, a drug alleviating Pi starvation responses in Arabidopsis. Plant Physiology.
  • Bardou F, Ariel F, Simpson CG, Romero-Barrios N, Laporte P, Balzergue S, Brown JW, Crespi M (2014) Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis. Developmental Cell.
  • Galland M, Boutet-Mercey S, Lounifi I, Godin B, Balzergue S, Grandjean O, Morin H, Perreau F, Debeaujon I, Rajjou L (2014) Compartmentation and dynamics of flavone metabolism in dry and germinated rice seeds. Plant and Cell Physiology, Volume 55, Issue 9, 1 September 2014, Pages 1646–1659.
  • Layat E, Leymarie J, El-Maarouf-Bouteau H, Caius J, Langlade N, Bailly C (2014) Translatome profiling in dormant and nondormant sunflower (Helianthus annuus) seeds highlights post-transcriptional regulation of germination. New Phytologist.



  • Eisenhut M, Planchais S, Cabassa C, Guivarc'h A, Justin AM, Taconnat L, Renou JP, Linka M, Gagneul D, Timm S, Bauwe H, Carol P, Weber AP (2013) Arabidopsis A BOUT DE SOUFFLE is a putative mitochondrial transporter involved in photorespiratory metabolism and is required for meristem growth at ambient CO(2) levels. The Plant Journal.
  • Renault H, El Amrani A, Berger A, Mouille G, Soubigou-Taconnat L, Bouchereau A, Deleu C (2013) Gama-Aminobutyric acid transaminase deficiency impairs central carbon metabolism and leads to cell wall defects during salt stress in Arabidopsis roots. Plant Cell & Environment.
  • Alexandre Degrave, Manon Moreau, Alban Launay, Marie-Anne Barny, Marie-Noëlle Brisset, Oriane Patrit, Ludivine Taconnat, Régine Vedel, and Mathilde Fagard (2013) The bacterial effector DspA/E is toxic in Arabidopsis thaliana and is required for multiplication and survival of fire blight pathogen. Molecular Plant Pathology.
  • Cole M, Jacobs B, Soubigou-Taconnat L, Balzergue S, Renou JP, Chandler JW, Werr W (2013) Live imaging with the DORNRÖSCHEN and DORNRÖSCHEN-LIKE promoter reveals dynamic changes in cell identity at the surface of microcalli of Arabidopsis embryonic suspensions. Plant Cell Reports.
  • Emilie Andrio, Daniel Marino, Anthony Marmeys, Marion Dunoyer de Segonzac, Isabelle Damiani, Andrea Genre, Stéphanie Huguet, Pierre Frendo, Alain Puppo, Nicolas Pauly (2013) Hydrogen peroxide-regulated genes in the Medicago truncatula–Sinorhizobium meliloti symbiosis. New Phytologist.
  • Thomas Rey, Amaury Nars, Maxime Bonhomme, Arnaud Bottin, Stephanie Huguet Sandrine Balzergue, Marie-Françoise Jardinaud, Jean-Jacques Bono, Julie Cullimore, Bernard Dumas, Clare Gough and Christophe Jacquet (2013) NFP, a LysM protein controlling Nod factor perception, also intervenes in Medicago truncatula resistance to pathogens. New Phytologist. 198(3): 875-886.
  • Jubault M, Lariagon C, Taconnat L, Renou JP, Gravot A, Delourme R, Manzanares-Dauleux MJ (2013) Partial resistance to clubroot in Arabidopsis is based on changes in the host primary metabolism and targeted cell division and expansion capacity. Functional & Integrative Genomics.
  • Laurent Bonneau, Stephanie Huguet, Daniel Wipf, Nicolas Pauly and Hoai-Nam Truong (2013) Combined phosphate and nitrogen limitation generates a nutrient stress transcriptome favorable for arbuscular mycorrhizal symbiosis in Medicago truncatula. New Phytologist.
  • Chloé Marchive, François Roudier, Loren Castaings, Virginie Bréhaut, Eddy Blondet, Vincent Colot, Christian Meyer, Anne Krapp (2013) Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants. Nature Communications.
  • Djafi N, Vergnolle C, Cantrel C, Wietrzyñski W, Delage E, Cochet F, Puyaubert J, Soubigou-Taconnat L, Gey D, Collin S, Balzergue S, Zachowski A, Ruelland E. (2013) The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase. Frontiers in Plant Physiology.
  • Garcia AV, Charrier A, Schikora A, Bigeard J, Pateyron S, de Tauzia-Moreau ML, Evrard A, Mithöfer A, Martin-Magniette ML, Virlogeux-Payant I, Hirt H (2013) Salmonella enterica flagellin is recognized via FLS2 and activates PAMP-triggered immunity in Arabidopsis thaliana. Molecular Plant.

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  • Moreau M, Azzopardi M, Clément G, Dobrenel T, Marchive C, Renne C, Martin-Magniette ML, Taconnat L, Renou JP, Robaglia C, Meyer C (2012) Mutations in the Arabidopsis Homolog of LST8/GβL, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days. PlantCell.
  • Junker A, Mönke G, Rutten T, Keilwagen J, Seifert M, Thi TM, Renou JP, Balzergue S, Viehöver P, Hähnel U, Ludwig-Müller J, Altschmied L, Conrad U, Weisshaar B, Bäumlein H (2012) Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana. Plant Journal.
  • Damiani I, Baldacci-Cresp F, Hopkins J, Andrio E, Balzergue S, Lecomte P, Puppo A, Abad P, Favery B, Hérouart D (2012) Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes. New Phytologist. Apr;194(2):511-22.
  • Pétriacq P, de Bont L, Hager J, Didierlaurent L, Mauve C, Guérard F, Noctor G, Pelletier S, Renou JP, Tcherkez G, Gakière B. (2012) Inducible NAD overproduction in Arabidopsis alters metabolic pools and gene expression correlated with increased salicylate content and resistance to Pst-AvrRpm1. Plant Journal.
  • Dutilleul C, Benhassaine-Kesri G, Demandre C, Rézé N, Launay A, Pelletier S, Renou JP, Zachowski A, Baudouin E, Guillas I (2012) Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. New Phytologist . 2012 Apr;194(1):181-91
  • Moreau M, Degrave A, Vedel R, Bitton F, Patrit O, Renou JP, Barny MA, Fagard M (2012) EDS1 Contributes to Nonhost Resistance of Arabidopsis thaliana Against Erwinia amylovora. Molecular Plant Microbe Interact. 2012 Mar;25(3):421-30.
  • Francisco A Cubillos, Jennifer Yansouni, Hamid Khalili, Sandrine Balzergue, Samira Elftieh, Marie-Laure Martin-Magniette, Yann Serrand, Loic Lepiniec, Sebastien Baud, Bertrand Dubreucq, Jean-Pierre Renou, Christine Camilleri and Olivier Loudet (2012) Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. BMC Genomics.
  • Eudes A, George A, Mukerjee P, Kim JS, Pollet B, Benke PI, Yang F, Mitra P, Sun L, Cetinkol OP, Chabout S, Mouille G, Soubigou-Taconnat L, Balzergue S, Singh S, Holmes BM, Mukhopadhyay A, Keasling JD, Simmons BA, Lapierre C, Ralph J, Loqué D (2012) Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification. Plant Biotechnology Journal . 2012 Mar 28. doi: 10.1111/j.1467-7652.2012.00692.
  • Clara Bourbousse, Ikhlak Ahmed, François Roudier, Gérald Zabulon, Eddy Blondet, Sandrine Balzergue, Vincent Colot, Chris Bowler and Frédy Barneche (2012) Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis. PLoS Genetics.
  • Rosa Lozano-Durán, Irene Garcia, Stéphanie Huguet, Sandrine Balzergue, Luís Romero & Eduardo R. Bejarano (2012) Geminivirus C2 protein represses genes involved in sulphur assimilation and this effect can be counteracted by jasmonate treatment. European Journal of Plant Pathology.
  • Morgane Gicquel, Ludivine Taconnat, Jean-Pierre Renou, Marie-Andrée Esnault, Francisco Cabello-Hurtado (2012) Kinetic transcriptomic approach revealed metabolic pathways and genotoxic-related changes implied in the Arabidopsis response to ionising radiations. Plant Science.
  • Fanny Ramel, Simona Birtic, Christian Ginies, Ludivine Soubigou-Taconnat, Christian Triantaphylidès, and Michel Havaux (2012) Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants. PNAS.
  • Audrey Courtial, Cyril Jourda, Sandrine Arribat, Sandrine Balzergue, Stéphanie Huguet, Matthieu Reymond, Jacqueline Grima-Pettenati, Yves Barrière (2012) Comparative expression of cell wall related genes in four maize RILs and one parental line of variable lignin content and cell wall degradability. Meydica.
  • David Rengel, Sandrine Arribat, Pierre Maury, Marie-Laure Martin-Magniette, Thibaut Hourlier, Marion Laporte, Didier Varès, Sébastien Carrère, Philippe Grieu, Sandrine Balzergue, Jérôme Gouzy, Patrick Vincourt and Nicolas B. Langlade (2012) Gene-Phenotype network shows a core and genetic variability for drought response in sunflower and reveals key processes in natural environment. PLoSOne.
  • Jean-Marc Lacape, Michel Claverie, Ramon O. Vidal, Marcelo F Carazzolle, Gonçalo A Guimarães Pereira, Manuel Ruiz, Martial Pré, Danny Llewellyn, Yves Al-Ghazi, John Jacobs, Janine Jean, Christopher Viot, Alexis Dereeper, Stéphanie Huguet, Marc Giband1, Claire Lanaud (2012) Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PLoSOne.
  • Ruben Puga-Freitas; Sébastien Barot; Ludivine Taconnat; Jean-Pierre Renou; Manuel Blouin, Ph.D (2012) Signal molecules mediate the impact of the earthworm Aporrectodea caliginosa on growth, development and defence of the plant Arabidopsis thaliana. PLoSOne.
  • Caracuel Z, Lozano-Durán R, Huguet S, Arroyo-Mateos M, Rodríguez-Negrete EA, Bejarano ER (2012) C2 from Beet curly top virus promotes a cell environment suitable for efficient replication of geminiviruses, providing a novel mechanism of viral synergism. New Phytologist. 2012 May;194(3):846-58.
  • Markakis MN, De Cnodder T, Lewandowski M, Simon D, Boron A, Balcerowicz D, Doubbo T, Taconnat L, Renou JP, Höfte H, Verbelen JP, Vissenberg K (2012) Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana. BMC Plant Biology.



  • Libeau, Pierre; Durandet, Monique; Granier, Fabienne; Marquis, Catherine; Berthomé, Richard; Renou, Jean-Pierre; Taconnat-Soubirou, Ludivine; HORLOW, Christine (2011) Gene Expression profiling of Arabidopsis meiocytes. Plant Biology.
  • Rosa Lozano-Durán, Tabata Rosas-Díaz, Giuliana Gusmaroli, Ana P. Luna, Ludivine Taconnat, Xing Wang Deng and Eduardo (2011) Bejarano Geminiviruses Subvert Ubiquitination by Altering CSN-Mediated Derubylation of SCF E3 Ligase Complexes and Inhibit Jasmonate Signaling in Arabidopsis thaliana. The Plant Cell, Vol. 23: 1014–1032, March 2011.
  • Sormani R, Delannoy E, Lageix S, Bitton F, Lanet E, Saez-Vasquez J, Deragon JM, Renou JP, Robaglia C (2011) Sub-Lethal Cadmium Intoxication In Arabidopsis thaliana Impacts Translation At Multiple Levels. Plant Cell Physiol. 2011 Jan 19.
  • Florence Jay, Yu Wang, Agnès Yu, Ludivine Taconnat, Sandra Pelletier, Vincent Colot, Jean-Pierre Renou, Olivier Voinnet (2011) Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathogens.
  • Latrasse D, Germann S, Houba-Hérin N, Dubois E, Bui-Prodhomme D, Hourcade D, Juul-Jensen T, Le Roux C, Majira A, Simoncello N, Granier F, Taconnat L, Renou JP, Gaudin V (2011) Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One. 2011 Jan 31;6(1).
  • Daniel Bouyer, Francois Roudier, Maren Heese, Ellen D. Andersen, Delphine Gey, Moritz K. Nowack, Justin Goodrich, Jean-Pierre Renou, Paul E. Grin3, Vincent Colot, Arp Schnittger (2011) Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase TransitionMarch 10, 2011, PLoS Genetics.
  • Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cézard L, Le Bris P, Borrega N, Hervé J, Blondet E, Balzergue S, Lapierre C, Jouanin L (2011) Disruption of LACCASE4 and 17 Results in Tissue-Specific Alterations to Lignification of Arabidopsis thaliana Stems. Plant Cell.
  • Tamasloukht B, Wong Quai Lam MS, Martinez Y, Tozo K, Barbier O, Jourda C, Jauneau A, Borderies G, Balzergue S, Renou JP, Huguet S, Martinant JP, Tatout C, Lapierre C, Barrière Y, Goffner D, Pichon M (2011) Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression. Journal of Experimental Botany.
  • Yanhua Yu, Jana Streubel, Sandrine Balzergue, Antony Champion, Jens Boc3, Ralf Koebnik, Jiaxun Fen2, Valérie Verdier and Boris Szurek (2011) Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. Oryzae  depends on a new TAL effector which induces the rice nodulin-3 Os11N3 gene. Molecular Plant-Microbe Interactions.
  • Jérémie Bazin, Nicolas Langladeb Patrick Vincourtb Sandrine Arribat, Sandrine Balzergue, Hayat El-Maarouf-Bouteau and Christophe Bailly (2011) Targeted mRNA oxidation plays an essential role in sunflower seed dormancy alleviation during dry after-ripening. Plant Cell.
  • Sivasenkar Lingam, Julia Mohrbacher, Tzvetina Brumbarova, Thomas Potuschak, Claudia Fink-Straub, Eddy Blondet, Pascal Genschik and Petra Bauer (2011) Protein interaction of the bHLH transcription factor FIT with EIN3/EIL1 reveals molecular linkage between iron acquisition regulation and ethylene signaling. Plant Cell.
  • Krapp A., Berthomé R, Orsel M, Mercey-Boutet S, Yu A., Castaings L., Elfthieh S., Major H.,  Renou J.P and Daniel-Vedele F (2011) Arabidopsis roots and shoots show distinct temporal adaptation pattern towards N starvation. Plant Physiology.
  • Annick Dubois, Arnaud Remay, Olivier Raymond, Sandrine Balzergue, Aurélie Chauvet, Marion Maene, Yann Pecrix, Julien Jeauffre, Tatiana Thouroude, Véronique Boltz, Marie-Laure Martin- Magniette, Stéphane Janczarski, Fabrice Legeai, Jean-Pierre Renou, Philippe Vergne, Manuel Le Bris, Fabrice Foucher and Mohammed Bendahmane (2011) Genomic approach to study floral development genes in Rosa sp. PLOS One.
  • Pont C, Murat F, Confolent C, Balzergue S, Salse J (2011) RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biololy. 2011 Dec 2;12(12):R119.
  • Peltier C., Schmidlin L., Klein E., Taconnat L., Prinsen E., Heintz D., Weyens G., Lefebvre M., Renou J.P. and Gilmer D. (2011) Expression of the Beet necrotic yellow vein virus p25 protein induces hormonal changes and a root branching phenotype on Arabidopsis thaliana. Transgenic Research.
  • Renault H., El Amrani A., Yu A., Renou J.P., Mouille G., Palauqui J.C., Bouchereau A. & Deleu C. (2011) Genome-wide analysis reveals that high GABA levels affect plant development by altering cell elongation in Arabidopsis thaliana. Plant Cell Physiology.
  • Cheminant S, Wild M, Bouvier F, Pelletier S, Renou JP, Erhardt M, Hayes S, Terry MJ, Genschik P, Achard P (2011) DELLAs regulate chlorophyll and carotenoid biosynthesis to prevent photooxidative damage during seedling deetiolation in Arabidopsis. Plant Cell.
  • Bauer P, Blondet E (2011) Transcriptome analysis of ein3 eil1 mutants in response to iron deficiency. Plant Signaling & Behaviour. 2011 Nov 1;6(11):1669-71.



  • Jay F, Renou JP, Voinnet O, Navarro L. (2010) Biotic Stress-Associated microRNAs: Identification, Detection, Regulation, and Functional Analysis. Methods in Molecular Biology. 592:183-202.
  • Krugman T, Chagué V, Peleg Z, Balzergue S, Just J, Korol AB, Nevo E, Saranga Y, Chalhoub B, Fahima T (2010) Multilevel regulation and signalling processes associated with adaptation to terminal drought in wild emmer wheat. Functional & Integrative Genomics.
  • Ranocha P, Denancé N, Vanholme R, Freydier A, Martinez Y, Hoffmann L, Köhler L, Pouzet C, Renou JP, Sundberg B, Boerjan W, Goffner D. (2010) Walls Are Thin1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers. Plant Journal.
  • Mhamdi A., Hager J., Chaouch S., Queval G., Han Y., Taconnat L., Saindrenan P., Issakidis-Bourguet E., Houda G., Renou J.P. and Noctor G. (2010) Arabidopsis GLUTATHIONE REDUCTASE 1 is required to limit daylength-dependent H2O2-triggered cell death and enable appropriate gene expression through both salicylic acid and jasmonic acid signaling pathways. Plant Physiology.
  • Chadi S, Young R, Le Guillou S, Tilly G, Bitton F, Martin-Magniette ML, Soubigou-Taconnat L, Balzergue S, Vilotte M, Peyre C, Passet B, Beringue V, Renou JP, Le Provost F, Laude H, Vilotte JL (2010)  Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse. BMC-Genomics.
  • Chagué V, Just J, Mestiri I, Balzergue S, Tanguy AM, Huneau C, Huteau V, Belcram H, Coriton O, Jahier J, Chalhoub B (2010) Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids. New Phytologist.
  • Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, Oury FX, Ward J, Boros D, Gebruers K, Delcour JA, Courtin CM, Bedo Z, Saulnier L, Guillon F, Balzergue S, Shewry PR, Feuillet C, Charmet G, Salse J (2010) Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Functional & Integrative Genomics.
  • Pelletier S., Van Orden J., Wolf S., Vissenberg K., Delacourt J., Ndong Y.A., Pelloux J., Bischoff V., Urbian A., Mouille G., Lemonnier G., Renou J.P., Hofte H. (2010) A role for pectin de-methylesterification in a developmentally regulated growth acceleration in dark-grown Arabidopsis hypocotyls. New Phytologist.
  • Cohen D, Bogeat-Triboulot MB, Tisserant E, Balzergue S, Martin-Magniette ML, Lelandais G, Ningre N, Renou JP, Tamby JP, Le Thiec D, Hummel I (2010) Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes. BMC Genomics.
  • Frei N., Muller P., Jammes F., Kizis D., Leung J., Perrot-Rechennman C. and Bianchi. M.W. (2010) Tudor-SN is essential for stress adaptation and controls levels of secreted proteins mRNAs in Arabidopsis. Plant Cell.

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  • Bashandy T, Taconnat L, Renou JP, Meyer Y, Reichheld JP (2009) Accumulation of Flavonoids in an ntra ntrb Mutant Leads to Tolerance to UV-C. Molecular Plant. Mar;2(2):249-58.
  • Matakiadis T, Alboresi A, Jikumaru Y, Tatematsu K, Pichon O, Renou JP, Kamiya Y, Nambara E, Truong HN (2009) The Arabidopsis Abscisic Acid Catabolic Gene CYP707A2 Plays a Key Role in Nitrate Control of Seed Dormancy. Plant Physiology. Feb;149(2):949-60.
  • Pitzschke A., Djamei A., Bitton F. and Hirt H. (2009) Major Role of the MEKK1–MKK1/2–MPK4 Pathway in ROS Signalling. Molecular Plant, Advance Jan;2(1):120-37.
  • Minic Z, Jamet E, San-Clemente H, Pelletier S, Renou JP, Rihouey C, Okinyo DP, Proux C, Lerouge P, Jouanin L. (2009) Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes. BMC Plant Biology. Jan 16;9(1):6.
  • Besson-Bard A., Gravot A., Richaud P., Auroy P., Gaymard F., Taconnat L., Renou J.P., Pugin A. and Wendehenne D. (2009) Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiology. Mar;149(3):1302-15.
  • Krinke O., Flemr M., Vergnolle C., Collin S., Renou J.P., Taconnat L., Yu A., Burketová L., Valentová O., Zachowski A. and Ruelland E. (2009 Phospholipase D activation is an early component of the salicylic acid signaling pathway in Arabidopsis thaliana cell suspensions. Plant Physiology. May;150(1):424-36.
  • Elis S, Blesbois E, Couty I, Balzergue S, Martin-Magniette ML, Batellier F, Govoroun MS. (2009) Identification of germinal disk region derived genes potentially involved in hen fertility. Molecular Reproduction & Development. 2009 May 29. Epub ehaed of print.
  • Mainguet S., Gakière B., Majira A., Pelletier S., Bringel F., Guérard F., Caboche M., Berthomé R. and Renou J.P. (2009) Uracil Salvage is Necessary for Early Arabidopsis Development. Plant Journal. Oct;60(2):280-91.
  • Meng P.H., Raynaud C., Blanchet S., Massoud K., Domenichini S., Henry Y., Soubigou-Taconnat L., Lelarge-Trouverie C., Saindrenan P., Tcherkez G., Renou J.P. and Bergounioux C. (2009) Crosstalks between myo-inositol metabolism, programmed cell death and basal immunity in Arabidopsis. PLoS One. Oct 8;4(10):e7364.
  • Jamet E., Roujol D., San-Clemente H., Irshad M., Soubigou-Taconnat L, Renou JP & Pont-Lezica R. (2009) Cell wall biogenesis of Arabidopsis thaliana elongating cells:transcriptomics complements proteomics. BMC Genomics. 2009 Oct 31;10(1):505.
  • Castaings L, Camargo A, Pocholle D, Gaudon V, Texier Y, Boutet-Mercey S, Taconnat L, Renou JP, Daniel-Vedele F, Fernandez E, Meyer C, Krapp A. (2009) The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis. Plant Journal. Feb;57(3):426-35.



  • Cartriaux F., Contesto C., Gallou A., Desbrosses G., Taconnat L., Renou J.P. and Touraine B. (2008) Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium sp. ORS278 and Pseudomonas syringae pv tomato DC3000 leads to complex transcriptome changes. Molecular Plant-Microbe Interactions. 2008 Feb;21(2):244-59
  • Ruffel S., Freixes S., Balzergue S., Tillard P., Jeudy C., Martin-Magniette M.L., van der Merwe M.J., Kakar K., Gouzy J., Fernie A.R., Udvardi M., Salon C., Gojon A., Lepetit M. (2008) Systemic signaling of the plant N status triggers specific transcriptome responses depending on the N source in Medicago truncatula. Plant Physiology. 146(4):2020-35.
  • Cossegal M., Chambrier P., Mbelo S., Balzergue S., Martin-Magniette M.L., Moing A., Deborde C., Guyon V., Perez P., Rogowsky P. (2008) Transcriptional and metabolic adjustments in AGPase deficient bt2 maize kernels. Plant Physiology. 146(4):1553-70.
  • Elis S., Batellier F., Couty I., Balzergue S., Martin-Magniette M.L., Monget P., Blesbois E. and Govoroun M.S. (2008) Search for the genes involved in oocyte maturation and early embryo development in the hen. BMC Genomics. 29;9(1):110
  • Chávez Montes R.A.,  Ranocha P., Martinez Y., Minic Z., Jouanin L., Marquis M., Saulnier L., Fulton L.M., Cobbett C.S., Bitton F., Renou J.P. , Jauneau A. and Goffner D. (2008) Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity. Plant Physiology. 147(1):63-77.
  • Achard P., Renou J.P., Berthomé R., Harberd N.P. and Genschik P. (2008) Plant DELLAs restrain growth and promote survival of adversity by reducing the levels of reactive oxygen species. Current Biology. 18(9):656-60.
  • Martin-Magniette M.L., Aubert J., Bar-Hen A., Elftieh S., Magniette F., Renou J.P. and Daudin J.J. (2008) Normalization for triple-target microarray experiments. BMC bioinformatics. 9(1):216.
  • Mérigout P., Lelandais M., Bitton F., Renou J.P., Briand X., Meyer C. & Daniel-Vedele F. (2008) Physiological and transcriptomic aspects of urea uptake and assimilation in Arabidopsis plants. Plant Physiology. Jul;147(3):1225-38.
  • Benhamed M, Martin-Magniette ML, Taconnat L, Bitton F, Servet C, De Clercq R, De Meyer B, Buysschaert C, Rombauts S, Villarroel R, Aubourg S, Beynon J, Bhalerao RP, Coupland G, Gruissem W, Menke FL, Weisshaar B, Renou JP, Zhou DX & Hilson P. (2008) Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant Journal. Nov;56(3):493-504.
  • Depuydt S, Trenkamp S, Fernie AR, Elftieh S, Renou JP, Vuylsteke M, Holsters M, Vereecke D. (2008) An integrated genomics approach to define niche establishment by Rhodococcus fascians. Plant Physiology. Mar;149(3):1366-86.
  • Loizeau K., De Brouwer V., Gambonnet B., Yu A., Renou J.P., Van Der Straeten D., E. Lambert W., Rébeillé F. and Ravanel S. (2008) A genome-wide and metabolic analysis determined the adaptation of Arabidopsis cells to folate depletion induced by methotrexate. Plant Physiology. Dec;148(4):2083-95.
  • Bouchabke-Coussa O, Quashie ML, Seoane-Redondo J, Fortabat MN, Gery C, Yu A, Linderme D, Trouverie J, Granier F, Teoule E, Durand-Tardif M. (2008) ESKIMO1 is a key gene involved in water economy as well as cold acclimation and salt tolerance. BMC Plant Biology. Dec 7;8(1):125.



  • Masclaux-Daubresse C., Purdy S., Lemaitre T., Pourtau N., Taconnat L., Renou J.P. & Wingler A. (2007) Genetic variation suggests an interaction between cold acclimation and the metabolic regulation of leaf senescence. Plant Physiology . Jan;143(1):434-46.
  • Ricaud L., Proux C., Renou J.P., Pichon O., Fochesato S., Ortet P., Montane M.H. (2007) ATM-Mediated Transcriptional and Developmental Responses to gamma-rays in Arabidopsis. PLoS ONE. May 9;2(5):e430.
  • Krinke O., Ruelland E., Valentova O., Vergnolle C., Renou J.P., Taconnat L., Flemr M., Burketova L., Zachowski A.  (2007) Phosphatidylinositol 4-kinase Activation Is an Early Response to Salicylic Acid in Arabidopsis Suspension Cells. Plant Physiology. 144(3): 1347-59.
  • Hematy K., Sado P.E., Van Tuinen A., Rochange S., Desnos T., Balzergue S., Pelletier S., Renou J.P., Hofte H. (2007) A Receptor-like Kinase Mediates the Response of Arabidopsis Cells to the Inhibition of Cellulose Synthesis. Current Biology. 2007 Jun 5;17(11):922-31.
  • Gagnot S., Tamby J.P., Martin-Magniette M.L., Bitton F., Taconnat L., Balzergue S., Aubourg S., Renou  J.P., Lecharny A. and Brunaud V. (2007) CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform. Nucleic Acid research. 36(Database issue):D986-90.
  • Sclep G., Allemeersch J., Liechti R., De Meyer B., Beynon J., Bhalerao R., Moreau Y., Nietfeld W., Renou J.P., Reymond P., Kuiper M.T., Hilson P. (2007)  CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics. Oct 18;8(1):400.
  • Aubourg S., Martin-Magniette M.L., Brunaud V., Taconnat L., Bitton F., Balzergue S., Jullien P.E., Ingouff M., Thareau V., Schiex T., Lecharny A., Renou J.P. (2007) Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome. BMC Genomics. Nov 2;8(1):401.
  • Ribot C., Hirsch J., Balzergue S., Tharreau D., Nottéghem J.L., Lebrun M.H., Morel J.B. (2007) Susceptibility of rice to the blast fungus, Magnaporthe grisea. J Plant Physiology. 165(1):114-24.
  • Ramel F, Sulmon C, Cabello-Hurtado F, Taconnat L, Martin-Magniette ML, Renou JP, El Amrani A, Couée I, Gouesbet G.  (2007) Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance. BMC Genomics. Dec 5;8:450.
  • Xu L., Zhao Z., Dong A., Soubigou-Taconnat L., Renou J.P., Steinmetz A. & Shen W.H. (2007) Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana. Molecular & Cellular Biology. 28(4):1348-60.

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  • Abdulrazzak N., Pollet B., Ehlting J., Larsen K., Asnaghi C., Ronseau S., Proux C.,  Erhardt M., Seltzer V., Renou J.P., Ullmann P., Pauly M., Lapierre C. & Werck-Reichhart D. (2006) A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiology. 140(1):30-48.
  • Guyomarch's S., Benhamed M., Lemonnier G., Renou J.P., Zhou D.X. & Delarue M. (2006) MGOUN3: evidence for chromatin-mediated regulation of FLC expression. Journal of Experimental Botany. 57(9):2111-9.
  • Ferrario-Mery S., Besin E., Pichon O., Meyer C., Hodges M. (2006) The regulatory PII protein controls arginine biosynthesis in Arabidopsis. FEBS Letter. Apr 3;580(8):2015-20.
  • Herbette S., Taconnat L., Hugouvieux V., Martin-Magniette M.L., Cuine S., Auroy P., Richaud P., Forestier C., Bourguignon J., Renou J.P., Vavasseur A. and Leonhart N. (2006) Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots. Biochimie. Nov;88(11):1751-65.
  • Manavella P.A., Arce A.L., Dezar C.A., Bitton F., Renou J.P., Crespi M. & Chan R. (2006) Cross-talk between ethylene and drought signalling pathways is mediated by the sunflower Hahb-4 transcription factor. Plant Journal. 48, 125-137.
  • Zhu Y., Dong A., Meyer D., Pichon O., Renou J.P., Cao K. & Shen W.H. (2006) Arabidopsis NRP1 and NRP2 encode histone chaperones and are required for maintaining postembryonic root growth. Plant Cell. 18(11):2879-92.



  • Dieterle M., Thomann A., Renou J.P., Parmentier Y., Cognat V., Lemonnier G., Müller R., Shen W.-H., Kretsch T. and Genschick P. (2005) Molecular and functional characterization of Arabidopsis Cullin 3A. Plant Journal.  41(3):386-99.
  • Bertrand C., Benhamed M., Li Y.-F., Ayadi M., Lemonnier G., Renou J.P., Delarue M., and Zhou D.-X. (2005) Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth. J. The Journal of Biological Chemistry. 280(2):1465-73.
  • Pineau C., Freydier A., Ranocha P., Jauneau A., Turner S., Lemonnier G., Renou J.P., Tarkowski P., Sandberg G., Jouanin L., Sundberg B., Boudet A.M., Goffner D. and Pichon M. (2005) hca: an Arabidopsis mutant exhibiting unusual cambial activity and altered vascular patterning. Plant Journal. Oct;44(2):271-289.
  • Jammes F., Lecomte P., Almeida-Engler J., Bitton F., Martin-Magniette M.L., Renou J.P., Abad P. and Favery B. (2005) Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis. Plant Journal. Nov;44(3):447-58.
  • Vergnolle C., Vaultier M.N., Taconnat L., Renou J.P., Kader J.C., Zachowski A. and Ruelland E. (2005) The cold-induced early activation of phospholipase C and D pathways determine the response of two distinct clusters of genes in Arabidopsis cell suspensions. Plant Physiology. 139(3):1217-33.



  • Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Ret M.L., Martin-Magniette M.L., Mireau H., Peeters N., Renou J.P., Szurek B., Taconnat L., Small I. (2004) Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis. Plant Cell. 16: 2089-2103.
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